It isn't clear from the reports I've read but based on the statement from Burnley, I assume it stays until the accounts are cleared to be within the rules. It does seem a somewhat pointless consequence at the moment unless they are desperate to sign an out of contract player.
If Wigan don’t start on minus points next season and are allowed to spend big again on wages to get out of league 1 then it really will make a complete mockery of the football league and the FA.